EGAD00001001048
Samples from Edwards et al 2015 - doi:10.1186/s12864-015-1685-z
Illumina HiSeq 2000
-
EGAD00001001071
Samples from the "100" project that are in the ICGC PanCancer project.
Illumina HiSeq 2000
10
EGAD00001001394
Samples from Ross Innes et. al 2015 - doi:10.1038/ng.3357
Illumina HiSeq 2000
-
EGAD00001001457
All samples from the "100" project
Illumina HiSeq 2000
24
EGAD00001001960
upcoming publication
Illumina HiSeq 2000
-
EGAD00001002218
Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - 129_cohort
EAC whole genomic sequencing data - Publication Secrier & Li et al., 2016, Nature Genetics
Illumina HiSeq 2000
10
EGAD00001002241
Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - chemo_cohort
Illumina HiSeq 2000
6
EGAD00001002689
ICGC Oesophageal Adenocarcinoma tissue samples
Illumina HiSeq 2000
-
EGAD00001003292
WGS sequencing for cases from the ICGC ESAD-UK project
Tumours 50x Normals 30x
HiSeq X
BAM files
These samples are all available in ICGC release 24
Illumina HiSeq 2000
34
EGAD00001003580
WGS sequencing for 303 cases (620 samples) from the ICGC ESAD-UK project
Tumours 50x Normals 30x
HiSeq X
BAM files
These samples are all available in ICGC release 26
Illumina HiSeq 2000
38
EGAD00001004137
WGS sequencing for 409 cases (832 samples) from the ICGC ESAD-UK project
Tumours 50x Normals 30x
HiSeq X
BAM files
These samples are all available in ICGC release 28
Illumina HiSeq 2000
-
EGAD00001004417
Data supporting: "The landscape of selection in 551 Esophageal Adenocarcinomas defines genomic biomarkers for the clinic." Frankell et al.
WGS (BAM files)
379 matched tumour-normal pairs
Illumina HiSeq 2000
-
EGAD00001004775
Data supporting: "Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma." Mourikis et al.
WGS (BAM files)
521 samples
Illumina HiSeq 2000
-
EGAD00001005434
Data supporting: "Genomic evidence supports a clonal diaspora model for metastases of esophageal adenocarcinoma." Noorani et al.
WGS (BAM files)
134 samples for 18 cases
Includes primary, lymph-node, distant metastatic, Barrett's and normal samples.
Illumina HiSeq 2000
-
EGAD00001007493
Data supporting: "Genomic analysis of response to neoadjuvant chemotherapy in esophageal adenocarcinoma" Izadi et al.
WGS for tumour and normal samples.
RNAseq for tumour samples.
HiSeq X Five
Illumina HiSeq 2000
Illumina NovaSeq 6000
8
EGAD00001007496
Data supporting: "Widespread reorganisation of the regulatory chromatin landscape facilitates resistance to inhibition of oncogenic ERBB2 signalling" Ogden et al.
WGS for tumour and normal samples.
RNAseq for tumour samples.
HiSeq X Five
Illumina HiSeq 2000
-
EGAD00001007785
Data from 496 OCCAMS (Oesophageal Cancer Clinical And Molecular Stratification) cases.
WGS
BAM files
496x oesophageal adenocarcinoma samples
496x normal samples
HiSeq X Five
Illumina HiSeq 2000
Illumina NovaSeq 6000
-
EGAD00001007808
Data supporting "Interplay of processes shapes structural variations undergoing selection in oesophageal adenocarcinoma" Ng, Contino et al.
WGS (BAM files)
383 oesophageal adenocarcinoma samples
383 normal samples
Illumina HiSeq 2000
-
EGAD00001011095
Data supporting: "The transcriptional landscape of endogenous retroelements delineates esophageal adenocarcinoma subtypes" WGS for 452 samples
HiSeq X Five
Illumina HiSeq 2000
-
EGAD00001011187
Data supporting: "Understanding the malignant potential of gastric metaplasia of the oesophagus and its relevance to Barrett’s Oesophagus surveillance: individual-level data analysis" Black et al (WGS OACs/BOs/normals)
HiSeq X Five
Illumina HiSeq 2000
Illumina NovaSeq 6000
unspecified
63
EGAD00001011191
Data supporting: "TBC" Ganguli et al (WGS for 1298 samples)
HiSeq X Five
Illumina HiSeq 2000
Illumina NovaSeq 6000
unspecified
42
EGAD00001011196
Data supporting: "Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma" Abbas et al (WGS for 1397 samples)
HiSeq X Five
Illumina HiSeq 2000
Illumina NovaSeq 6000
unspecified
6